I mean, I keep my tubo's tubed to keep from mangling them when I rummage through my humi looking for that lost cigar. If they are in long term storage I do not fondle them as much and therefore they do not need the protection that the tubes provide. As long as you take the lids off you get all the benifits (whatever they may be) of being bareback. The tube first, last and always provide protection to that very fragile wrappes that provides a surprising amount of the overall flavor to a fine cigar. I see no reason to keep it in the tube just for ageing, except to protect the investment.
Nice smoking room CC!